Read bmrb.m - Revision history

Kuprov: Update function See also links and function index membership

2026-06-06T18:40:44Z

Update function See also links and function index membership

Kuprov: Rename Arguments section heading to Parameters

2026-06-05T17:51:47Z

Rename Arguments section heading to Parameters

Kuprov: Normalise sequential blank lines

2026-04-25T11:29:33Z

Normalise sequential blank lines

Kuprov: Restore pre-bulk-edit wiki content

2026-04-05T14:49:52Z

Restore pre-bulk-edit wiki content

Kuprov: Sync syntax/arguments/outputs with current Spinach source

2026-04-05T14:12:09Z

Sync syntax/arguments/outputs with current Spinach source

Kuprov at 15:58, 21 October 2020

2020-10-21T15:58:11Z

Kuprov: /* See also */

2020-10-21T15:57:11Z

‎See also

Kuprov: /* See also */

2020-10-21T15:57:01Z

‎See also

Kuprov at 15:56, 21 October 2020

2020-10-21T15:56:33Z

Admin: Created page with "This function reads BMRB files. ==Syntax== [aa_num,aa_typ,pdb_id,chemsh]=read_bmrb(bmrb_file_name) ==Description== The function parses Biological Magnetic Resonance Ba..."

2016-08-12T16:08:23Z

Created page with "This function reads BMRB files. ==Syntax== [aa_num,aa_typ,pdb_id,chemsh]=read_bmrb(bmrb_file_name) ==Description== The function parses Biological Magnetic Resonance Ba..."

New page

This function reads BMRB files.

==Syntax==

[aa_num,aa_typ,pdb_id,chemsh]=read_bmrb(bmrb_file_name)

==Description==
The function parses Biological Magnetic Resonance Bank (BMRB) files and extracts amino acid numbers, amino acid types, PDB atom identifiers and chemical shifts.

==Arguments==

bmrb_file_name - ASCII character string specifying the BMRB file name

==Returns==

aa_num - nspins x 1 vector containing the number of the amino acid
residue to which each of the imported spins belongs

aa_typ - nspins x 1 cell array containing the PDB identifier of the
the amino acid residue to which each of the imported spins
belongs

pdb_id - nspins x 1 cell array containing the PDB identifier of the
the atom type which each of the imported spins belongs

chems - nspins x 1 vector containing the chemial shift of each of
the imported spins

==Examples==
Direct calls to this function are discouraged, it is called by [[protein.m]] protein data import module.

==Notes==
BMRB data format belongs to the PDB family that is not famous for syntactic rigour. If this function fails to parse your file, take a look inside and modify it appropriately.

==See also==
[[protein.m]], [[nuclacid.m]], [[gparse.m]]

''Revision 3284, authors: [[Ilya Kuprov]]''

@@ Line 30: / Line 30: @@
 ==See also==
-[[Spin_system_specification#Protein_and_nucleic_acid_import| Protein and nucleic acid import]]
+[[protein.m]], [[c2spinach.m]], [[cyprinol.m]], [[fatty_acid.m]], [[g2spinach.m]], [[gissmo2spinach.m]], [[gparse.m]], [[karplus_fit.m]], [[killcross.m]], [[killdiag.m]], [[merge_inp.m]], [[methyl_group.m]], [[nuclacid.m]], [[ocparse.m]], [[oparse.m]], [[parsexml.m]], [[read_pdb_nuc.m]], [[read_pdb_pro.m]], [[v2spinach.m]], [[weblab2nqi.m]], [[x2spinach.m]], [[Spin_system_specification]], [[Protein NMR simulations]], [[Import, export, and visualisation]]
 ''Version 2.5, authors: [[Ilya Kuprov]], [[Zenawi Welderufael]]''

← Older revision		Revision as of 11:29, 25 April 2026
Line 35:		Line 35:

	[[Import, export, and visualisation]]		[[Import, export, and visualisation]]
−

	''Version 2.5, authors: [[Ilya Kuprov]], [[Zenawi Welderufael]]''		''Version 2.5, authors: [[Ilya Kuprov]], [[Zenawi Welderufael]]''

@@ Line 1: / Line 1: @@
 {{DISPLAYTITLE:read_bmrb.m}} __NOTOC__
 This function Biological Magnetic Resonance Bank (BMRB) files and extracts amino acid numbers, amino acid types, PDB atom identifiers and chemical shifts.
 ==Syntax==
-[aa_num,aa_typ,pdb_id,chemsh]=read_bmrb(bmrb_file_name)
+     [aa_num,aa_typ,pdb_id,chemsh]=read_bmrb(bmrb_file_name)
 ==Arguments==
-aa_num - amino acid numbers, vector
+     bmrb_file_name - ASCII character string specifying the BMRB file name
-       aa_typ - amino acid types, cell array of strings
+==Returns==
-       pdb_id - atom identifiers using PDB nomenclature,
+     aa_num - nspins x 1 vector containing the number of the amino acid
-                cell array of strings
+              residue to which each of the imported spins belongs
-−
-       chems  - chemical shifts in ppm
+     aa_typ - nspins x 1 cell array containing the PDB identifier of the
+              the amino acid residue to which each of the imported spins
-  Note: direct calls are discouraged, see the protein HOWTO docu-
+              belongs
-       ment for instructions on importing protein data.
+     pdb_id - nspins x 1 cell array containing the PDB identifier of the
- ilya.kuprov@weizmann.ac.il
+              the atom type which each of the imported spins belongs
 ==Notes==
 #Direct calls to this function are discouraged, it is called by [[protein.m]] protein data import module.
 #BMRB data format belongs to the PDB family that is not famous for syntactic rigour. If this function fails to parse your file, take a look inside and modify it appropriately.
 ==See also==
 [[Spin_system_specification#Protein_and_nucleic_acid_import| Protein and nucleic acid import]]
@@ Line 38: / Line 38: @@
 ''Version 2.5, authors: [[Ilya Kuprov]], [[Zenawi Welderufael]]''

@@ Line 1: / Line 1: @@
 {{DISPLAYTITLE:read_bmrb.m}} __NOTOC__
 This function Biological Magnetic Resonance Bank (BMRB) files and extracts amino acid numbers, amino acid types, PDB atom identifiers and chemical shifts.
 ==Syntax==
-     [aa_num,aa_typ,pdb_id,chemsh]=read_bmrb(bmrb_file_name)
+[aa_num,aa_typ,pdb_id,chemsh]=read_bmrb(bmrb_file_name)
 ==Arguments==
-     bmrb_file_name - ASCII character string specifying the BMRB file name
+aa_num - amino acid numbers, vector
-==Returns==
+ Note: direct calls are discouraged, see the protein HOWTO docu-
-     aa_num - nspins x 1 vector containing the number of the amino acid
+  ilya.kuprov@weizmann.ac.il
 ==Notes==
 #Direct calls to this function are discouraged, it is called by [[protein.m]] protein data import module.
 #BMRB data format belongs to the PDB family that is not famous for syntactic rigour. If this function fails to parse your file, take a look inside and modify it appropriately.
 ==See also==
 [[Spin_system_specification#Protein_and_nucleic_acid_import| Protein and nucleic acid import]]
@@ Line 38: / Line 38: @@
 ''Version 2.5, authors: [[Ilya Kuprov]], [[Zenawi Welderufael]]''

@@ Line 36: / Line 36: @@
 [[Protein NMR simulations]]
-[[Import, export, and_visualisation]]
+[[Import, export, and visualisation]]
 ''Version 2.5, authors: [[Ilya Kuprov]], [[Zenawi Welderufael]]''

← Older revision		Revision as of 15:57, 21 October 2020
Line 35:		Line 35:

	[[Protein NMR simulations]]		[[Protein NMR simulations]]
		+
		+	[[Import, export, and_visualisation]]


	''Version 2.5, authors: [[Ilya Kuprov]], [[Zenawi Welderufael]]''		''Version 2.5, authors: [[Ilya Kuprov]], [[Zenawi Welderufael]]''