Difference between revisions of "Overtone pa.m"
(Created page with "Overtone soft pulse-acquire experiment. Syntax: spectrum=overtone_pa(spin_system,parameters,H,R,K) where H is the hamiltonian commutation superoperator, R is the ...") |
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| − | Overtone soft pulse-acquire experiment. | + | Overtone soft pulse-acquire experiment with frequency-domain acquisition. |
| − | + | ==Syntax== | |
| − | + | spectrum=overtone_a(spin_system,parameters,H,R,K) | |
| − | |||
| − | |||
| − | + | ==Description== | |
| − | + | The function performes frequency-domain acquisition at the overtone frequency. Because time-domain overtone spectroscopy is difficult (see http://dx.doi.org/10.1039/C4CP03994G for details), this mode of acquisition is preferable in practice. Simulations [[assume.m|assumptions]] should be set to 'qnmr'. | |
| − | |||
| − | + | ==Arguments== | |
| − | + | parameters.sweep - vector with two elements giving the spectrum frequency extents | |
| + | in Hz around the overtone frequency | ||
| + | |||
| + | parameters.npoints - number of points in the spectrum | ||
| + | |||
| + | parameters.rho0 - initial state | ||
| + | |||
| + | parameters.coil - detection state | ||
| + | |||
| + | H - Hamiltonian commutation superoperator | ||
| + | |||
| + | R - unthermalised relaxation superoperator | ||
| + | |||
| + | K - chemical kinetics superoperator | ||
| + | |||
| + | parameters.Lx - X Zeeman operator on the quadrupolar nucleus | ||
| + | |||
| + | parameters.rf_frq - pulse frequency offset from the overtone frequency on the quadrupolar nucleus, Hz | ||
| + | |||
| + | parameters.rf_pwr - pulse power on the quadrupolar nucleus, Hz | ||
| + | |||
| + | parameters.rf_dur - pulse duration, seconds | ||
| − | + | parameters.method - 'average' uses the average Hamiltonian theory, 'fplanck' uses Fokker-Planck formalism | |
| + | for the calculation of the pulse evolution. | ||
| − | + | ==Returns== | |
| − | + | The function returns the populations of the detection state at the frequencies specified. | |
| − | |||
| − | + | ==Examples== | |
| − | + | The following 15N overtone spectrum is produced by examples/nmr_overtone/mas_valine_1.m example file: | |
| − | |||
| − | + | [[File:ot_example_2.png]] | |
| − | |||
| − | + | ==Notes== | |
| + | # Relaxation must be present in the system dynamics, or the matrix inverse-times-vector operation performed by the frequency domain detection module would fail to converge. The relaxation superoperator should ''not'' be thermalised. | ||
| − | + | # Relaxation theory is not applied during the pulse. | |
| − | |||
| − | |||
| − | + | # Average Hamiltonian and Fokker-Plankc pulses produce signals in different phases. We are trying to figure out why, but it look non-trivial. The average Hamiltonian theory option is faster. | |
| − | + | ||
| − | + | # Irrespectively of the pulse algorithm option selection, the magic angle spinning is always handled with the Fokker-Planck formalism. | |
| + | |||
| + | ==See also== | ||
| + | [[overtone_cp.m]], [[overtone_dante.m]], [[overtone_hmqc.m]], [[overtone_a.m]], [[slowpass.m]] | ||
| + | |||
| + | |||
| + | ''Revision 3284, authors: [[Ilya Kuprov]]'' | ||
Revision as of 17:06, 16 August 2016
Overtone soft pulse-acquire experiment with frequency-domain acquisition.
Syntax
spectrum=overtone_a(spin_system,parameters,H,R,K)
Description
The function performes frequency-domain acquisition at the overtone frequency. Because time-domain overtone spectroscopy is difficult (see http://dx.doi.org/10.1039/C4CP03994G for details), this mode of acquisition is preferable in practice. Simulations assumptions should be set to 'qnmr'.
Arguments
parameters.sweep - vector with two elements giving the spectrum frequency extents
in Hz around the overtone frequency
parameters.npoints - number of points in the spectrum
parameters.rho0 - initial state
parameters.coil - detection state
H - Hamiltonian commutation superoperator
R - unthermalised relaxation superoperator
K - chemical kinetics superoperator
parameters.Lx - X Zeeman operator on the quadrupolar nucleus
parameters.rf_frq - pulse frequency offset from the overtone frequency on the quadrupolar nucleus, Hz
parameters.rf_pwr - pulse power on the quadrupolar nucleus, Hz
parameters.rf_dur - pulse duration, seconds
parameters.method - 'average' uses the average Hamiltonian theory, 'fplanck' uses Fokker-Planck formalism
for the calculation of the pulse evolution.
Returns
The function returns the populations of the detection state at the frequencies specified.
Examples
The following 15N overtone spectrum is produced by examples/nmr_overtone/mas_valine_1.m example file:
Notes
- Relaxation must be present in the system dynamics, or the matrix inverse-times-vector operation performed by the frequency domain detection module would fail to converge. The relaxation superoperator should not be thermalised.
- Relaxation theory is not applied during the pulse.
- Average Hamiltonian and Fokker-Plankc pulses produce signals in different phases. We are trying to figure out why, but it look non-trivial. The average Hamiltonian theory option is faster.
- Irrespectively of the pulse algorithm option selection, the magic angle spinning is always handled with the Fokker-Planck formalism.
See also
overtone_cp.m, overtone_dante.m, overtone_hmqc.m, overtone_a.m, slowpass.m
Revision 3284, authors: Ilya Kuprov
