Difference between revisions of "Floquet.m"
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@pulse_sequence - pulse sequence function handle | @pulse_sequence - pulse sequence function handle | ||
| + | |||
| + | parameters.rate - spinning rate in Hz. Positive numbers | ||
| + | for JEOL, negative for Varian and Bruker | ||
| + | due to different rotation directions. | ||
| − | + | parameters.axis - spinning axis, given as a normalized | |
| + | 3-element vector | ||
| − | + | parameters.spins - a cell array giving the spins that | |
| − | + | the pulse sequence involves, e.g. | |
| + | {'1H','13C'} | ||
| − | + | parameters.offset - a cell array giving transmitter off- | |
| − | + | sets in Hz on each of the spins listed | |
| − | + | in parameters.spins array | |
| − | + | parameters.max_rank - maximum harmonic rank to retain in | |
| − | + | the solution (increase till conver- | |
| − | + | gence is achieved, approximately | |
| + | equal to the number of spinning si- | ||
| + | debands in the spectrum) | ||
| − | + | parameters.grid - spherical grid file name. See grids | |
| − | + | directory in the kernel. | |
| − | |||
| − | |||
| − | |||
| − | + | parameters.sum_up - when set to 1 (default), returns the | |
| − | + | powder average. When set to 0, returns | |
| + | individual answers for each point in | ||
| + | the powder as a cell array. | ||
| + | |||
| + | parameters.* - additional subfields may be required by your | ||
| + | pulse sequence - check its documentation page | ||
| − | + | The parameters structure is passed to the pulse sequence with the following additional parameters set: | |
parameters.spc_dim - matrix dimension for the spatial | parameters.spc_dim - matrix dimension for the spatial | ||
Revision as of 15:56, 8 July 2018
Floquet magic angle spinning context. This function generates Floquet Hamiltonian at a particular orientation, relaxation superoperator, kinetics superoperator, applies the necessary offsets, updates the parameter set, and passes all of that to the pulse sequence, which should be supplied as a handle. Parallel powder averaging is applied.
Contents
Syntax
answer=floquet(spin_system,@pulse_sequence,parameters,assumptions)
Arguments
@pulse_sequence - pulse sequence function handle
parameters.rate - spinning rate in Hz. Positive numbers
for JEOL, negative for Varian and Bruker
due to different rotation directions.
parameters.axis - spinning axis, given as a normalized
3-element vector
parameters.spins - a cell array giving the spins that
the pulse sequence involves, e.g.
{'1H','13C'}
parameters.offset - a cell array giving transmitter off-
sets in Hz on each of the spins listed
in parameters.spins array
parameters.max_rank - maximum harmonic rank to retain in
the solution (increase till conver-
gence is achieved, approximately
equal to the number of spinning si-
debands in the spectrum)
parameters.grid - spherical grid file name. See grids
directory in the kernel.
parameters.sum_up - when set to 1 (default), returns the
powder average. When set to 0, returns
individual answers for each point in
the powder as a cell array.
parameters.* - additional subfields may be required by your
pulse sequence - check its documentation page
The parameters structure is passed to the pulse sequence with the following additional parameters set:
parameters.spc_dim - matrix dimension for the spatial
dynamics subspace
parameters.spn_dim - matrix dimension for the spin
dynamics subspace
Outputs
This function returns the powder average of whatever it is that the pulse sequence returns.
Examples
The following example files in the Spinach example set make use of this context function:
nmr_solids/mas_powder_trp_floquet.m - large-scale simulation of tryptophan 13C MAS NMR
nmr_solids/mas_powder_gly_floquet.m - glycine 13C MAS NMR spectrum
nmr_solids/mas_powder_suc_floquet.m - large-scale simulation of sucrose 13C MAS NMR
nmr_solids/mas_powder_ala_floquet.m - alanine 13C MAS NMR spectrum
nmr_solids/mas_powder_nqi_floquet.m - deuterium NQI MAS NMR, no second-order rotating frame corrections
nmr_solids/mas_powder_dip_floquet.m - MAS NMR on a pair of dipole coupled spins
nmr_solids/mas_powder_csa_floquet.m - MAS NMR on a simple system with a CSA
Notes
- The choice of the rank depends on the spinning rate (the slower the spinning, the greater ranks are required). The rank should be set approximately equal to the expected number of spinning sidebands. Increase till the answer stops changing.
- The state projector assumes a powder - single crystal MAS is not supported, use singlerot.m instead.
- Perturbative corrections to the rotating frame transformation are not supported - use singlerot.m instead.
See also
powder.m, liquid.m, roadmap.m, singlerot.m, doublerot.m, imaging.m, gridfree.m, crystal.m
Version 2.2, authors: Ilya Kuprov, Luke Edwards