Difference between revisions of "Ocparse.m"

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                 the array dimension in zeros to add on each
 
                 the array dimension in zeros to add on each
 
                 side of the cube
 
                 side of the cube
 +
 +
==See also==
 +
[[oparse.m]], [[c2spinach.m]], [[x2spinach.m]], [[Import,_export,_and_visualisation#Data_import|Data import]]

Revision as of 12:16, 25 April 2026


ORCA cube file parser. Extracts the normalised probability density and the associated metric information from ORCA spin density in "3D simple format" (see ORCA manual). Syntax:


    [density,ext,dx,dy,dz]=ocparse(filename,pad_factor)

Outputs:

    density  - probability density cube with dimensions
               ordered as [X Y Z]

    ext      - grid extents in Angstrom, ordered as
               [xmin xmax ymin ymax zmin zmax]

    dx,dy,dz - grid steps in the three directions, Angstrom


Version 1.9, authors Elizaveta Suturina, Ilya Kuprov

Arguments

filename - character string specifying the file to load

   pad_factor - padding factor specifying how many multiples
                the array dimension in zeros to add on each
                side of the cube

See also

oparse.m, c2spinach.m, x2spinach.m, Data import