Difference between revisions of "Read bmrb.m"
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| − | This function | + | {{DISPLAYTITLE:read_bmrb.m}} __NOTOC__ |
| + | This function Biological Magnetic Resonance Bank (BMRB) files and extracts amino acid numbers, amino acid types, PDB atom identifiers and chemical shifts. | ||
==Syntax== | ==Syntax== | ||
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[aa_num,aa_typ,pdb_id,chemsh]=read_bmrb(bmrb_file_name) | [aa_num,aa_typ,pdb_id,chemsh]=read_bmrb(bmrb_file_name) | ||
| − | == | + | ==Parameters== |
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bmrb_file_name - ASCII character string specifying the BMRB file name | bmrb_file_name - ASCII character string specifying the BMRB file name | ||
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chems - nspins x 1 vector containing the chemial shift of each of | chems - nspins x 1 vector containing the chemial shift of each of | ||
the imported spins | the imported spins | ||
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==Notes== | ==Notes== | ||
| − | BMRB data format belongs to the PDB family that is not famous for syntactic rigour. If this function fails to parse your file, take a look inside and modify it appropriately. | + | #Direct calls to this function are discouraged, it is called by [[protein.m]] protein data import module. |
| + | #BMRB data format belongs to the PDB family that is not famous for syntactic rigour. If this function fails to parse your file, take a look inside and modify it appropriately. | ||
==See also== | ==See also== | ||
| − | [[protein.m]], [[nuclacid.m]], [[ | + | [[protein.m]], [[c2spinach.m]], [[cyprinol.m]], [[fatty_acid.m]], [[g2spinach.m]], [[gissmo2spinach.m]], [[gparse.m]], [[karplus_fit.m]], [[killcross.m]], [[killdiag.m]], [[merge_inp.m]], [[methyl_group.m]], [[nuclacid.m]], [[ocparse.m]], [[oparse.m]], [[parsexml.m]], [[read_pdb_nuc.m]], [[read_pdb_pro.m]], [[v2spinach.m]], [[weblab2nqi.m]], [[x2spinach.m]], [[Spin_system_specification]], [[Protein NMR simulations]], [[Import, export, and visualisation]] |
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| − | '' | + | ''Version 2.5, authors: [[Ilya Kuprov]], [[Zenawi Welderufael]]'' |
Latest revision as of 19:40, 6 June 2026
This function Biological Magnetic Resonance Bank (BMRB) files and extracts amino acid numbers, amino acid types, PDB atom identifiers and chemical shifts.
Syntax
[aa_num,aa_typ,pdb_id,chemsh]=read_bmrb(bmrb_file_name)
Parameters
bmrb_file_name - ASCII character string specifying the BMRB file name
Returns
aa_num - nspins x 1 vector containing the number of the amino acid
residue to which each of the imported spins belongs
aa_typ - nspins x 1 cell array containing the PDB identifier of the
the amino acid residue to which each of the imported spins
belongs
pdb_id - nspins x 1 cell array containing the PDB identifier of the
the atom type which each of the imported spins belongs
chems - nspins x 1 vector containing the chemial shift of each of
the imported spins
Notes
- Direct calls to this function are discouraged, it is called by protein.m protein data import module.
- BMRB data format belongs to the PDB family that is not famous for syntactic rigour. If this function fails to parse your file, take a look inside and modify it appropriately.
See also
protein.m, c2spinach.m, cyprinol.m, fatty_acid.m, g2spinach.m, gissmo2spinach.m, gparse.m, karplus_fit.m, killcross.m, killdiag.m, merge_inp.m, methyl_group.m, nuclacid.m, ocparse.m, oparse.m, parsexml.m, read_pdb_nuc.m, read_pdb_pro.m, v2spinach.m, weblab2nqi.m, x2spinach.m, Spin_system_specification, Protein NMR simulations, Import, export, and visualisation
Version 2.5, authors: Ilya Kuprov, Zenawi Welderufael
