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HCCH-COSY pulse sequence from Figure 7.26a of Protein NMR Spectroscopy (2nd edition) using the bidirectional propagation method described in (http://dx.doi.org/10.1016/j.jmr.2014.04.002). The sequence is hard-wired to work on 1H,13C proteins and uses PDB labels to select spins that will be affected by otherwise ideal pulses.




   parameters.npoints     - a vector of three integers giving the
                            number of points in the three temporal
                            dimensions, ordered as [t1 t2 t3].

   parameters.sweep       - a vector of three real numbers giving
                            the sweep widths in the three frequen-
                            cy dimensions, ordered as [f1 f2 f3].

   parameters.J_cc        - 13C-13C J-coupling to be used for mag-
                            netisation transfer, typically 35 Hz

   parameters.J_ch        - 1H-13C J-coupling to be used for mag-
                            netisation transfer, typically 140 Hz

   parameters.delta       - evolution delay, see the pulse sequence
                            diagram, typically 1.1e-3 seconds.

   parameters.decouple_f3 - list of spins to be decoupled during
                            the detection period, typically {'13C'}

   H   - Hamiltonian matrix, received from context function

   R   - relaxation superoperator, received from context function

   K   - kinetics superoperator, received from context function


   fid - three-dimensional free induction decay


Below is the output of examples/nmr_proteins/hcch_cosy_gb1.m example file.

Hcch cosy gb1.png


  1. Spin labels must be set to PDB atom IDs ('CA', 'HA', etc.) in sys.labels for this sequence to work properly.
  2. F1 is 1H, F2 is C, F3 is H.

See also

Protein pulse sequences

Version 2.5, authors: Matt Walker, Ilya Kuprov