Difference between revisions of "Idosyzs.m"
(Update function See also links and function index membership) |
|||
| (9 intermediate revisions by 2 users not shown) | |||
| Line 1: | Line 1: | ||
| − | {{DISPLAYTITLE:idosyzs.m}} | + | {{DISPLAYTITLE:idosyzs.m}} __NOTOC__ |
A simplified model of the Zangger-Sterk pure shift iDOSY pulse sequence for studies of the diffusional | A simplified model of the Zangger-Sterk pure shift iDOSY pulse sequence for studies of the diffusional | ||
attenuation during soft pulses as described in https://doi.org/10.1016/j.jmr.2019.02.010. | attenuation during soft pulses as described in https://doi.org/10.1016/j.jmr.2019.02.010. | ||
| Line 5: | Line 5: | ||
==Syntax== | ==Syntax== | ||
| − | |||
| − | == | + | inten=idosyzs(spin_system,parameters,H,R,K,G,F) |
| + | |||
| + | ==Parameters== | ||
parameters.rho0 - initial state | parameters.rho0 - initial state | ||
parameters.coil - detection state | parameters.coil - detection state | ||
| − | + | ||
parameters.spins - nuclei on which the sequence runs | parameters.spins - nuclei on which the sequence runs | ||
| Line 18: | Line 19: | ||
parameters.sel_g_amp - gradient amplitude during the selective pulse, T/m | parameters.sel_g_amp - gradient amplitude during the selective pulse, T/m | ||
| − | + | ||
parameters.rf_phi - phase of the inversion pulse, rad/s | parameters.rf_phi - phase of the inversion pulse, rad/s | ||
| − | + | ||
parameters.delta_big - length of the diffusion delay, s | parameters.delta_big - length of the diffusion delay, s | ||
parameters.delta_sml - pulse width of the gradient for diffusion | parameters.delta_sml - pulse width of the gradient for diffusion | ||
encoding, s | encoding, s | ||
| − | + | ||
| − | parameters. | + | parameters.rf_dur - length of the selective 180 degree pulse, s |
| − | |||
| − | |||
parameters.filename - a character string specifying the pulse shape, e.g gaussian_1000.pk | parameters.filename - a character string specifying the pulse shape, e.g gaussian_1000.pk | ||
| − | + | ||
parameters.pulse_npoints - number of points in the soft pulse | parameters.pulse_npoints - number of points in the soft pulse | ||
parameters.diff - diffusion constant, m^2/s | parameters.diff - diffusion constant, m^2/s | ||
| − | + | ||
The last five parameters (H,R,K,G,F) are built automatically by [[imaging.m]] context function | The last five parameters (H,R,K,G,F) are built automatically by [[imaging.m]] context function | ||
when this sequence is called from that [[Kernel_contexts|context]]. | when this sequence is called from that [[Kernel_contexts|context]]. | ||
| Line 47: | Line 46: | ||
==See also== | ==See also== | ||
| − | [[imaging.m]], [[ | + | [[imaging.m]], [[chirp_pulse.m]], [[shaped_pulse_xy.m]], [[step.m]], [[evolution.m]], [[coherence.m]], [[dosy_oneshot.m]], [[spendosy.m]], [[spendosycosy.m]], [[psyche.m]], [[psycosy.m]], [[spencosy.m]], [[st_ideal.m]], [[ufmq.m]], [[Built-in_experiments]], [[Kernel_functions]] |
| − | |||
| − | ''Version 2.4, authors: [[Maria Grazia Concilio]], [[Gareth | + | ''Version 2.4, authors: [[Maria Grazia Concilio]], [[Gareth Morris]]'' |
Latest revision as of 19:37, 6 June 2026
A simplified model of the Zangger-Sterk pure shift iDOSY pulse sequence for studies of the diffusional attenuation during soft pulses as described in https://doi.org/10.1016/j.jmr.2019.02.010.
Syntax
inten=idosyzs(spin_system,parameters,H,R,K,G,F)
Parameters
parameters.rho0 - initial state
parameters.coil - detection state
parameters.spins - nuclei on which the sequence runs
parameters.g_amp - gradient amplitude for diffusion encoding, T/m
parameters.sel_g_amp - gradient amplitude during the selective pulse, T/m
parameters.rf_phi - phase of the inversion pulse, rad/s
parameters.delta_big - length of the diffusion delay, s
parameters.delta_sml - pulse width of the gradient for diffusion
encoding, s
parameters.rf_dur - length of the selective 180 degree pulse, s
parameters.filename - a character string specifying the pulse shape, e.g gaussian_1000.pk
parameters.pulse_npoints - number of points in the soft pulse
parameters.diff - diffusion constant, m^2/s
The last five parameters (H,R,K,G,F) are built automatically by imaging.m context function
when this sequence is called from that context.
Outputs
fid - Intensity is the first point in the FID
Examples
An example is available in Spinach in: examples/nmr_spen/idosyzs_test_1.m.
See also
imaging.m, chirp_pulse.m, shaped_pulse_xy.m, step.m, evolution.m, coherence.m, dosy_oneshot.m, spendosy.m, spendosycosy.m, psyche.m, psycosy.m, spencosy.m, st_ideal.m, ufmq.m, Built-in_experiments, Kernel_functions
Version 2.4, authors: Maria Grazia Concilio, Gareth Morris
